Analysis of candidate genes expression associated with defense responses to root and collar rot disease caused by Phytophthora capsici in peppers Capsicum annuum.
Identifieur interne : 000303 ( Main/Exploration ); précédent : 000302; suivant : 000304Analysis of candidate genes expression associated with defense responses to root and collar rot disease caused by Phytophthora capsici in peppers Capsicum annuum.
Auteurs : Leila Mohammad Bagheri [Iran] ; Mehdi Nasr-Esfahani [Iran] ; Vahid Abdossi [Iran] ; Davood Naderi [Iran]Source :
- Genomics [ 1089-8646 ] ; 2020.
Abstract
Root and collar rot disease caused by Phytophthora capsici (Leonian) is one of the most serious diseases in pepper, Capsicum annuum L. Knowledge about resistant genes is limited in pepper accessions to P. capsici. In this study, a diverse collection of 37 commercial edible and ornamental genotypes, and implication of seven novel candidate DEGs genes (XLOC_ 021757, XLOC_021821, XLOC_012788, XLOC_011295, XLOC_021928, XLOC_015473 and XLOC_000341) were up-regulated on resistant and susceptible pepper cultivars, through real-time polymerase chain reaction (qPCR) at transplanting and maturing stages. All seven related defense-gene candidates were up-regulated in all inoculated accessions to P. capsici, but these genes were highly expressed in resistant ones, 19OrnP-PBI, 37ChillP-Paleo, and 23CherryP-Orsh. The transcriptional levels of the seven related candidate DEGs were 5.90, 5.64, 5.62, 5.18, 3.94, 3.69, 3.16 folds higher in the resistant pepper genotypes, than the control ones, non-inoculated genotypes respectively. The candidate genes expressed herein, will provide a basis for further gene cloning and functional verification studies, and also will aid in an understanding of the regulatory mechanism of pepper resistance to P. capsici.
DOI: 10.1016/j.ygeno.2020.01.002
PubMed: 31923618
Affiliations:
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Electronic address: mne2011@gmail.com.</nlm:affiliation><country xml:lang="fr">Iran</country><wicri:regionArea>Plant Protection Research Department, Isfahan Agriculture and Natural Resource Research and Education Center, AREEO, Isfahan</wicri:regionArea><wicri:noRegion>Isfahan</wicri:noRegion></affiliation></author><author><name sortKey="Abdossi, Vahid" sort="Abdossi, Vahid" uniqKey="Abdossi V" first="Vahid" last="Abdossi">Vahid Abdossi</name><affiliation wicri:level="1"><nlm:affiliation>Horticultural Department, Science and Research Branch, Islamic Azad University, Tehran, Iran.</nlm:affiliation><country xml:lang="fr">Iran</country><wicri:regionArea>Horticultural Department, Science and Research Branch, Islamic Azad University, Tehran</wicri:regionArea><wicri:noRegion>Tehran</wicri:noRegion></affiliation></author><author><name sortKey="Naderi, Davood" sort="Naderi, Davood" uniqKey="Naderi D" first="Davood" last="Naderi">Davood Naderi</name><affiliation wicri:level="1"><nlm:affiliation>Horticulture Department, Agricultural Faculty, Islamic Azad University, Isfahan, Iran; Young Researcher and Elite Club, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran. 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Electronic address: mne2011@gmail.com.</nlm:affiliation><country xml:lang="fr">Iran</country><wicri:regionArea>Plant Protection Research Department, Isfahan Agriculture and Natural Resource Research and Education Center, AREEO, Isfahan</wicri:regionArea><wicri:noRegion>Isfahan</wicri:noRegion></affiliation></author><author><name sortKey="Abdossi, Vahid" sort="Abdossi, Vahid" uniqKey="Abdossi V" first="Vahid" last="Abdossi">Vahid Abdossi</name><affiliation wicri:level="1"><nlm:affiliation>Horticultural Department, Science and Research Branch, Islamic Azad University, Tehran, Iran.</nlm:affiliation><country xml:lang="fr">Iran</country><wicri:regionArea>Horticultural Department, Science and Research Branch, Islamic Azad University, Tehran</wicri:regionArea><wicri:noRegion>Tehran</wicri:noRegion></affiliation></author><author><name sortKey="Naderi, Davood" sort="Naderi, Davood" uniqKey="Naderi D" first="Davood" last="Naderi">Davood Naderi</name><affiliation wicri:level="1"><nlm:affiliation>Horticulture Department, Agricultural Faculty, Islamic Azad University, Isfahan, Iran; Young Researcher and Elite Club, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran. Electronic address: d.naderi@khuisf.ac.ir.</nlm:affiliation><country xml:lang="fr">Iran</country><wicri:regionArea>Horticulture Department, Agricultural Faculty, Islamic Azad University, Isfahan, Iran; Young Researcher and Elite Club, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan</wicri:regionArea><wicri:noRegion>Isfahan</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genomics</title><idno type="eISSN">1089-8646</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Root and collar rot disease caused by Phytophthora capsici (Leonian) is one of the most serious diseases in pepper, Capsicum annuum L. Knowledge about resistant genes is limited in pepper accessions to P. capsici. In this study, a diverse collection of 37 commercial edible and ornamental genotypes, and implication of seven novel candidate DEGs genes (XLOC_ 021757, XLOC_021821, XLOC_012788, XLOC_011295, XLOC_021928, XLOC_015473 and XLOC_000341) were up-regulated on resistant and susceptible pepper cultivars, through real-time polymerase chain reaction (qPCR) at transplanting and maturing stages. All seven related defense-gene candidates were up-regulated in all inoculated accessions to P. capsici, but these genes were highly expressed in resistant ones, 19OrnP-PBI, 37ChillP-Paleo, and 23CherryP-Orsh. The transcriptional levels of the seven related candidate DEGs were 5.90, 5.64, 5.62, 5.18, 3.94, 3.69, 3.16 folds higher in the resistant pepper genotypes, than the control ones, non-inoculated genotypes respectively. The candidate genes expressed herein, will provide a basis for further gene cloning and functional verification studies, and also will aid in an understanding of the regulatory mechanism of pepper resistance to P. capsici.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">31923618</PMID><DateRevised><Year>2020</Year><Month>08</Month><Day>07</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1089-8646</ISSN><JournalIssue CitedMedium="Internet"><Volume>112</Volume><Issue>3</Issue><PubDate><Year>2020</Year><Month>05</Month></PubDate></JournalIssue><Title>Genomics</Title><ISOAbbreviation>Genomics</ISOAbbreviation></Journal><ArticleTitle>Analysis of candidate genes expression associated with defense responses to root and collar rot disease caused by Phytophthora capsici in peppers Capsicum annuum.</ArticleTitle><Pagination><MedlinePgn>2309-2317</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0888-7543(19)30658-5</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ygeno.2020.01.002</ELocationID><Abstract><AbstractText>Root and collar rot disease caused by Phytophthora capsici (Leonian) is one of the most serious diseases in pepper, Capsicum annuum L. Knowledge about resistant genes is limited in pepper accessions to P. capsici. In this study, a diverse collection of 37 commercial edible and ornamental genotypes, and implication of seven novel candidate DEGs genes (XLOC_ 021757, XLOC_021821, XLOC_012788, XLOC_011295, XLOC_021928, XLOC_015473 and XLOC_000341) were up-regulated on resistant and susceptible pepper cultivars, through real-time polymerase chain reaction (qPCR) at transplanting and maturing stages. All seven related defense-gene candidates were up-regulated in all inoculated accessions to P. capsici, but these genes were highly expressed in resistant ones, 19OrnP-PBI, 37ChillP-Paleo, and 23CherryP-Orsh. The transcriptional levels of the seven related candidate DEGs were 5.90, 5.64, 5.62, 5.18, 3.94, 3.69, 3.16 folds higher in the resistant pepper genotypes, than the control ones, non-inoculated genotypes respectively. The candidate genes expressed herein, will provide a basis for further gene cloning and functional verification studies, and also will aid in an understanding of the regulatory mechanism of pepper resistance to P. capsici.</AbstractText><CopyrightInformation>Copyright © 2020 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bagheri</LastName><ForeName>Leila Mohammad</ForeName><Initials>LM</Initials><AffiliationInfo><Affiliation>Horticultural Department, Science and Research Branch, Islamic Azad University, Tehran, Iran.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nasr-Esfahani</LastName><ForeName>Mehdi</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Plant Protection Research Department, Isfahan Agriculture and Natural Resource Research and Education Center, AREEO, Isfahan, Iran. Electronic address: mne2011@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Abdossi</LastName><ForeName>Vahid</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Horticultural Department, Science and Research Branch, Islamic Azad University, Tehran, Iran.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Naderi</LastName><ForeName>Davood</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Horticulture Department, Agricultural Faculty, Islamic Azad University, Isfahan, Iran; Young Researcher and Elite Club, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran. Electronic address: d.naderi@khuisf.ac.ir.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>01</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genomics</MedlineTA><NlmUniqueID>8800135</NlmUniqueID><ISSNLinking>0888-7543</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">AP2/ERF</Keyword><Keyword MajorTopicYN="Y">MIP gene</Keyword><Keyword MajorTopicYN="Y">Primers</Keyword><Keyword MajorTopicYN="Y">Proteinase</Keyword><Keyword MajorTopicYN="Y">Q-RTPCR</Keyword><Keyword MajorTopicYN="Y">XLOC</Keyword><Keyword MajorTopicYN="Y">cDNA</Keyword></KeywordList><CoiStatement>Declaration of Competing Interest There is no conflict of interest relating to this article.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>09</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>12</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>01</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>1</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>1</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>1</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31923618</ArticleId><ArticleId IdType="pii">S0888-7543(19)30658-5</ArticleId><ArticleId IdType="doi">10.1016/j.ygeno.2020.01.002</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Iran</li></country></list><tree><country name="Iran"><noRegion><name sortKey="Bagheri, Leila Mohammad" sort="Bagheri, Leila Mohammad" uniqKey="Bagheri L" first="Leila Mohammad" last="Bagheri">Leila Mohammad Bagheri</name></noRegion><name sortKey="Abdossi, Vahid" sort="Abdossi, Vahid" uniqKey="Abdossi V" first="Vahid" last="Abdossi">Vahid Abdossi</name><name sortKey="Naderi, Davood" sort="Naderi, Davood" uniqKey="Naderi D" first="Davood" last="Naderi">Davood Naderi</name><name sortKey="Nasr Esfahani, Mehdi" sort="Nasr Esfahani, Mehdi" uniqKey="Nasr Esfahani M" first="Mehdi" last="Nasr-Esfahani">Mehdi Nasr-Esfahani</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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